3D structure

PDB id
6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast nucleolar pre-60S ribosomal subunit (state 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6CB1_002 not in the Motif Atlas
Homologous match to J4_8P9A_013
Geometric discrepancy: 0.108
The information below is about J4_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_12410.1
Basepair signature
cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6CB1|1|1|C|185
6CB1|1|1|U|186
6CB1|1|1|A|187
6CB1|1|1|U|188
6CB1|1|1|G|189
*
6CB1|1|1|C|205
6CB1|1|1|G|206
6CB1|1|1|U|207
6CB1|1|1|C|208
*
6CB1|1|1|G|212
6CB1|1|1|A|213
6CB1|1|1|G|214
*
6CB1|1|1|C|226
6CB1|1|1|G|227
6CB1|1|1|U|228
6CB1|1|1|G|229
6CB1|1|1|U|230
6CB1|1|1|G|231

Current chains

Chain 1
35S pre-ribosomal RNA miscRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain A
Ribosome biogenesis protein NSA1
Chain C
60S ribosomal protein L4-A
Chain Y
60S ribosomal protein L26-A

Coloring options:


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