J4_6CFJ_017

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6CFJ|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFJ_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0943

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6CFJ|1|2A|C|268
6CFJ|1|2A|U|269
*
6CFJ|1|2A|G|370
6CFJ|1|2A|A|371
6CFJ|1|2A|G|372
6CFJ|1|2A|U|373
6CFJ|1|2A|A|374
6CFJ|1|2A|C|375
*
6CFJ|1|2A|G|399
6CFJ|1|2A|G|400
6CFJ|1|2A|A|401
6CFJ|1|2A|A|402
6CFJ|1|2A|U|403
6CFJ|1|2A|C|404
6CFJ|1|2A|U|405
6CFJ|1|2A|G|406
*
6CFJ|1|2A|U|421
6CFJ|1|2A|A|422
6CFJ|1|2A|A|423
6CFJ|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9