J4_6CFK_020

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFK_020 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0481

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6CFK|1|2A|G|1772
6CFK|1|2A|A|1773
6CFK|1|2A|C|1774
6CFK|1|2A|U|1775
6CFK|1|2A|G|1776
*
6CFK|1|2A|C|1788
6CFK|1|2A|A|1789
6CFK|1|2A|C|1790
6CFK|1|2A|A|1791
6CFK|1|2A|G|1792
*
6CFK|1|2A|C|1827
6CFK|1|2A|G|1828
6CFK|1|2A|A|1829
6CFK|1|2A|C|1830
*
6CFK|1|2A|G|1975
6CFK|1|2A|U|1976
6CFK|1|2A|A|1977
6CFK|1|2A|A|1978
6CFK|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA