J4_6CFK_027

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6CFK|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFK_027 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1275

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6CFK|1|1a|G|142
6CFK|1|1a|A|143
6CFK|1|1a|G|144
*
6CFK|1|1a|C|178
6CFK|1|1a|A|179
6CFK|1|1a|U|180
6CFK|1|1a|G|181
6CFK|1|1a|U|182
6CFK|1|1a|G|183
*
6CFK|1|1a|C|194
6CFK|1|1a|A|195
6CFK|1|1a|A|196
6CFK|1|1a|A|197
6CFK|1|1a|G|198
*
6CFK|1|1a|C|219
6CFK|1|1a|G|220
6CFK|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20