J4_6CFL_007

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CFL_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0443

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6CFL|1|1A|G|1803
6CFL|1|1A|A|1804
6CFL|1|1A|C|1805
6CFL|1|1A|U|1806
6CFL|1|1A|G|1807
*
6CFL|1|1A|C|1819
6CFL|1|1A|A|1820
6CFL|1|1A|C|1821
6CFL|1|1A|A|1822
6CFL|1|1A|G|1823
*
6CFL|1|1A|C|1858
6CFL|1|1A|G|1859
6CFL|1|1A|A|1860
6CFL|1|1A|C|1861
*
6CFL|1|1A|G|1997
6CFL|1|1A|U|1998
6CFL|1|1A|A|1999
6CFL|1|1A|A|2000
6CFL|1|1A|C|2001

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA