3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
6CZR|1|2A|A|2299
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6CZR_021 not in the Motif Atlas
Homologous match to J4_9DFE_009
Geometric discrepancy: 0.1276
The information below is about J4_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6CZR|1|2A|C|2296
6CZR|1|2A|A|2297
6CZR|1|2A|A|2298
6CZR|1|2A|A|2299
6CZR|1|2A|G|2300
*
6CZR|1|2A|C|2354
6CZR|1|2A|U|2355
6CZR|1|2A|G|2356
6CZR|1|2A|A|2357
6CZR|1|2A|C|2358
*
6CZR|1|2A|G|2381
6CZR|1|2A|G|2382
6CZR|1|2A|G|2383
*
6CZR|1|2A|C|2392
6CZR|1|2A|G|2393
6CZR|1|2A|G|2394

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 26
50S ribosomal protein L33
Chain 28
50S ribosomal protein L35
Chain 2S
50S ribosomal protein L18

Coloring options:


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