J4_6CZR_029

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6CZR_029 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1562

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6CZR|1|2a|G|137
6CZR|1|2a|A|138
6CZR|1|2a|G|139
*
6CZR|1|2a|C|173
6CZR|1|2a|A|174
6CZR|1|2a|U|175
6CZR|1|2a|G|176
6CZR|1|2a|U|177
6CZR|1|2a|G|178
*
6CZR|1|2a|C|201
6CZR|1|2a|A|202
6CZR|1|2a|A|203
6CZR|1|2a|A|204
6CZR|1|2a|G|205
*
6CZR|1|2a|C|215
6CZR|1|2a|G|216
6CZR|1|2a|C|217

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20