J4_6D90_002

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

6D90|1|2|A|672, 6D90|1|2|A|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6D90_002 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.1091

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6D90|1|2|A|671
6D90|1|2|A|672
6D90|1|2|G|673
*
6D90|1|2|C|1032
6D90|1|2|G|1033
6D90|1|2|A|1034
6D90|1|2|A|1035
6D90|1|2|A|1036
6D90|1|2|G|1037
*
6D90|1|2|C|1078
6D90|1|2|C|1079
6D90|1|2|A|1080
6D90|1|2|U|1081
6D90|1|2|A|1082
6D90|1|2|A|1083
6D90|1|2|A|1084
6D90|1|2|C|1085
6D90|1|2|G|1086
6D90|1|2|A|1087
6D90|1|2|U|1088
6D90|1|2|G|1089
*
6D90|1|2|U|1160
6D90|1|2|U|1161

Current chains

Chain 2

18S rRNA

Nearby chains

Chain MM

uS17

Chain OO

uS15

Chain PP

uS11

Chain XX

uS8

Chain YY

uS12

Chain bb

eS26

Chain n

eL41

Chain p

eL43