J4_6D9J_001

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

6D9J|1|2|A|672, 6D9J|1|2|A|1087

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6D9J_001 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.2288

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6D9J|1|2|A|671
6D9J|1|2|A|672
6D9J|1|2|G|673
*
6D9J|1|2|C|1032
6D9J|1|2|G|1033
6D9J|1|2|A|1034
6D9J|1|2|A|1035
6D9J|1|2|A|1036
6D9J|1|2|G|1037
*
6D9J|1|2|C|1078
6D9J|1|2|C|1079
6D9J|1|2|A|1080
6D9J|1|2|U|1081
6D9J|1|2|A|1082
6D9J|1|2|A|1083
6D9J|1|2|A|1084
6D9J|1|2|C|1085
6D9J|1|2|G|1086
6D9J|1|2|A|1087
6D9J|1|2|U|1088
6D9J|1|2|G|1089
*
6D9J|1|2|U|1160
6D9J|1|2|U|1161

Current chains

Chain 2

18S rRNA

Nearby chains

Chain MM

uS17

Chain OO

uS15

Chain PP

uS11

Chain XX

uS8

Chain YY

uS12

Chain bb

eS26

Chain n

eL41

Chain p

eL43