3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGUUC*GGUCAG*UC*GGCCGUAC
Length
21 nucleotides
Bulged bases
6D9J|1|5|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6D9J_006 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.1666
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6D9J|1|5|G|2406
6D9J|1|5|G|2407
6D9J|1|5|U|2408
6D9J|1|5|U|2409
6D9J|1|5|C|2410
*
6D9J|1|5|G|2434
6D9J|1|5|G|2435
6D9J|1|5|U|2436
6D9J|1|5|C|2437
6D9J|1|5|A|2438
6D9J|1|5|G|2439
*
6D9J|1|5|U|2538
6D9J|1|5|C|2539
*
6D9J|1|5|G|2777
6D9J|1|5|G|2778
6D9J|1|5|C|2779
6D9J|1|5|C|2780
6D9J|1|5|G|2781
6D9J|1|5|U|2782
6D9J|1|5|A|2783
6D9J|1|5|C|2784

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain R
eL19
Chain X
eL23
Chain g
eL34
Chain j
eL37
Chain k
eL38
Chain l
eL39

Coloring options:


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