J4_6DDD_007

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DDD_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0697

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6DDD|1|1|G|1799
6DDD|1|1|A|1800
6DDD|1|1|C|1801
6DDD|1|1|U|1802
6DDD|1|1|G|1803
*
6DDD|1|1|C|1815
6DDD|1|1|A|1816
6DDD|1|1|C|1817
6DDD|1|1|A|1818
6DDD|1|1|G|1819
*
6DDD|1|1|U|1854
6DDD|1|1|G|1855
6DDD|1|1|A|1856
6DDD|1|1|C|1857
*
6DDD|1|1|G|2002
6DDD|1|1|U|2003
6DDD|1|1|A|2004
6DDD|1|1|A|2005
6DDD|1|1|C|2006

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2