3D structure

PDB id
6DDD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAAG*UUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
6DDD|1|1|A|2315
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6DDD_009 not in the Motif Atlas
Homologous match to J4_4WF9_008
Geometric discrepancy: 0.1397
The information below is about J4_4WF9_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6DDD|1|1|C|2312
6DDD|1|1|A|2313
6DDD|1|1|A|2314
6DDD|1|1|A|2315
6DDD|1|1|G|2316
*
6DDD|1|1|U|2370
6DDD|1|1|U|2371
6DDD|1|1|G|2372
6DDD|1|1|A|2373
6DDD|1|1|C|2374
*
6DDD|1|1|G|2397
6DDD|1|1|G|2398
6DDD|1|1|G|2399
*
6DDD|1|1|C|2408
6DDD|1|1|G|2409
6DDD|1|1|G|2410

Current chains

Chain 1
23S rRNA

Nearby chains

Chain I
50S ribosomal protein L27
Chain O
50S ribosomal protein L33
Chain Q
50S ribosomal protein L35

Coloring options:


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