J4_6DLQ_001

3D structure

PDB id

6DLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

PRPP Riboswitch bound to PRPP, manganese chloride soaked structure

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGU*AG*UACAC*GGUAGGU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DLQ_001 not in the Motif Atlas

Homologous match to J4_6DLR_001

Geometric discrepancy: 0.0535

The information below is about J4_6DLR_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59845.1

Basepair signature

cWW-tSW-F-cWW-F-F-cWW-F-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6DLQ|1|A|A|5
6DLQ|1|A|G|6
6DLQ|1|A|U|7
*
6DLQ|1|A|A|55
6DLQ|1|A|G|56
*
6DLQ|1|A|U|71
6DLQ|1|A|A|72
6DLQ|1|A|C|73
6DLQ|1|A|A|74
6DLQ|1|A|C|75
*
6DLQ|1|A|G|98
6DLQ|1|A|G|99
6DLQ|1|A|U|100
6DLQ|1|A|A|101
6DLQ|1|A|G|102
6DLQ|1|A|G|103
6DLQ|1|A|U|104

Current chains

Chain A

PRPP Riboswitch

Nearby chains