J4_6DNC_002
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 6DNC|1|A|C|183, 6DNC|1|A|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DNC_002 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1688
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6DNC|1|A|G|142
6DNC|1|A|A|143
6DNC|1|A|G|144
*
6DNC|1|A|C|178
6DNC|1|A|A|179
6DNC|1|A|U|180
6DNC|1|A|A|181
6DNC|1|A|A|182
6DNC|1|A|C|183
6DNC|1|A|G|184
*
6DNC|1|A|C|193
6DNC|1|A|C|194
6DNC|1|A|A|195
6DNC|1|A|A|196
6DNC|1|A|A|197
6DNC|1|A|G|198
*
6DNC|1|A|U|219
6DNC|1|A|G|220
6DNC|1|A|C|221
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain GB
- 30S ribosomal protein S20
Coloring options: