J4_6DNC_004

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6DNC|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DNC_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.135

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6DNC|1|B|C|268
6DNC|1|B|C|269
*
6DNC|1|B|G|370
6DNC|1|B|A|371
6DNC|1|B|G|372
6DNC|1|B|U|373
6DNC|1|B|A|374
6DNC|1|B|G|375
*
6DNC|1|B|U|399
6DNC|1|B|G|400
6DNC|1|B|A|401
6DNC|1|B|A|402
6DNC|1|B|U|403
6DNC|1|B|A|404
6DNC|1|B|U|405
6DNC|1|B|G|406
*
6DNC|1|B|C|421
6DNC|1|B|A|422
6DNC|1|B|A|423
6DNC|1|B|G|424

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L28

Chain K

50S ribosomal protein L9