J4_6DNC_006
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6DNC|1|B|G|1271, 6DNC|1|B|A|1272, 6DNC|1|B|U|1273, 6DNC|1|B|A|1274, 6DNC|1|B|C|1646, 6DNC|1|B|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DNC_006 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1317
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6DNC|1|B|C|1270
6DNC|1|B|G|1271
6DNC|1|B|A|1272
6DNC|1|B|U|1273
6DNC|1|B|A|1274
6DNC|1|B|A|1275
6DNC|1|B|A|1276
*
6DNC|1|B|U|1294
6DNC|1|B|C|1295
*
6DNC|1|B|G|1645
6DNC|1|B|C|1646
6DNC|1|B|U|1647
6DNC|1|B|U|1648
*
6DNC|1|B|A|2009
6DNC|1|B|G|2010
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain FA
- 50S ribosomal protein L32
- Chain R
- 50S ribosomal protein L17
- Chain W
- 50S ribosomal protein L22
Coloring options: