J4_6DTI_001

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6DTI|1|A|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DTI_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0578

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6DTI|1|A|G|108
6DTI|1|A|A|109
6DTI|1|A|G|110
6DTI|1|A|U|111
6DTI|1|A|A|112
6DTI|1|A|A|113
6DTI|1|A|C|114
6DTI|1|A|G|115
*
6DTI|1|A|U|235
6DTI|1|A|C|236
*
6DTI|1|A|G|282
6DTI|1|A|U|283
6DTI|1|A|A|284
6DTI|1|A|G|285
*
6DTI|1|A|C|307
6DTI|1|A|C|308

Current chains

Chain A

16s rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17