J4_6DTI_003
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6DTI|1|A|A|799
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DTI_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0387
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6DTI|1|A|G|559
6DTI|1|A|G|560
6DTI|1|A|G|561
*
6DTI|1|A|C|748
6DTI|1|A|G|749
6DTI|1|A|A|750
6DTI|1|A|A|751
6DTI|1|A|A|752
6DTI|1|A|G|753
*
6DTI|1|A|C|794
6DTI|1|A|C|795
6DTI|1|A|C|796
6DTI|1|A|U|797
6DTI|1|A|A|798
6DTI|1|A|A|799
6DTI|1|A|A|800
6DTI|1|A|C|801
6DTI|1|A|G|802
6DTI|1|A|A|803
6DTI|1|A|U|804
6DTI|1|A|G|805
*
6DTI|1|A|C|857
6DTI|1|A|C|858
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
Coloring options: