J4_6EK0_007
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6EK0_007 not in the Motif Atlas
- Homologous match to J4_8CRE_006
- Geometric discrepancy: 0.1054
- The information below is about J4_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6EK0|1|L5|G|3634
6EK0|1|L5|A|3635
6EK0|1|L5|C|3636
6EK0|1|L5|U|3637
6EK0|1|L5|G|3638
*
6EK0|1|L5|C|3650
6EK0|1|L5|A|3651
6EK0|1|L5|A|3652
6EK0|1|L5|A|3653
6EK0|1|L5|G|3654
*
6EK0|1|L5|U|3690
6EK0|1|L5|G|3691
6EK0|1|L5|A|3692
6EK0|1|L5|U|3693
6EK0|1|L5|U|3694
*
6EK0|1|L5|A|3821
6EK0|1|L5|U|3822
6EK0|1|L5|G|3823
6EK0|1|L5|A|3824
6EK0|1|L5|A2M|3825
6EK0|1|L5|C|3826
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: