J4_6EK0_008

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6EK0|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6EK0_008 not in the Motif Atlas

Homologous match to J4_8CRE_007

Geometric discrepancy: 0.1131

The information below is about J4_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_63658.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6EK0|1|L5|C|3696
6EK0|1|L5|U|3697
6EK0|1|L5|G|3698
*
6EK0|1|L5|C|3752
6EK0|1|L5|G|3753
*
6EK0|1|L5|C|3771
6EK0|1|L5|U|3772
6EK0|1|L5|U|3773
6EK0|1|L5|A|3774
6EK0|1|L5|A|3775
6EK0|1|L5|G|3776
6EK0|1|L5|G|3777
6EK0|1|L5|U|3778
6EK0|1|L5|A|3779
6EK0|1|L5|G|3780
*
6EK0|1|L5|U|3814
6EK0|1|L5|G|3815
6EK0|1|L5|A|3816
6EK0|1|L5|A|3817
6EK0|1|L5|U|3818
6EK0|1|L5|G|3819

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA