J4_6ENF_001

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6ENF|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ENF_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1529

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6ENF|1|A|C|268
6ENF|1|A|C|269
*
6ENF|1|A|G|370
6ENF|1|A|A|371
6ENF|1|A|G|372
6ENF|1|A|U|373
6ENF|1|A|A|374
6ENF|1|A|G|375
*
6ENF|1|A|U|399
6ENF|1|A|G|400
6ENF|1|A|A|401
6ENF|1|A|A|402
6ENF|1|A|U|403
6ENF|1|A|A|404
6ENF|1|A|U|405
6ENF|1|A|G|406
*
6ENF|1|A|C|421
6ENF|1|A|A|422
6ENF|1|A|A|423
6ENF|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28