J4_6ERI_001

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU*GAGUAG*UGAAUCAG*CAAG

Length

20 nucleotides

Bulged bases

6ERI|1|AA|A|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ERI_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1658

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6ERI|1|AA|C|253
6ERI|1|AA|U|254
*
6ERI|1|AA|G|382
6ERI|1|AA|A|383
6ERI|1|AA|G|384
6ERI|1|AA|U|385
6ERI|1|AA|A|386
6ERI|1|AA|G|387
*
6ERI|1|AA|U|411
6ERI|1|AA|G|412
6ERI|1|AA|A|413
6ERI|1|AA|A|414
6ERI|1|AA|U|415
6ERI|1|AA|C|416
6ERI|1|AA|A|417
6ERI|1|AA|G|418
*
6ERI|1|AA|C|433
6ERI|1|AA|A|434
6ERI|1|AA|A|435
6ERI|1|AA|G|436

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L9, chloroplastic

Chain AX

50S ribosomal protein L28, chloroplastic