J4_6ERI_002
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAU*AACC*GAU*AGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ERI_002 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.0996
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ERI|1|AA|C|307
6ERI|1|AA|G|308
6ERI|1|AA|A|309
6ERI|1|AA|A|310
6ERI|1|AA|U|311
*
6ERI|1|AA|A|325
6ERI|1|AA|A|326
6ERI|1|AA|C|327
6ERI|1|AA|C|328
*
6ERI|1|AA|G|332
6ERI|1|AA|A|333
6ERI|1|AA|U|334
*
6ERI|1|AA|A|346
6ERI|1|AA|G|347
6ERI|1|AA|U|348
6ERI|1|AA|A|349
6ERI|1|AA|G|350
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L4, chloroplastic
- Chain AU
- 50S ribosomal protein L24, chloroplastic
Coloring options: