J4_6ERI_004

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCAAAC*GC*GCGC*GG

Length

15 nucleotides

Bulged bases

6ERI|1|AA|G|1292, 6ERI|1|AA|C|1293, 6ERI|1|AA|A|1294, 6ERI|1|AA|G|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ERI_004 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.2026

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6ERI|1|AA|C|1291
6ERI|1|AA|G|1292
6ERI|1|AA|C|1293
6ERI|1|AA|A|1294
6ERI|1|AA|A|1295
6ERI|1|AA|A|1296
6ERI|1|AA|C|1297
*
6ERI|1|AA|G|1315
6ERI|1|AA|C|1316
*
6ERI|1|AA|G|1681
6ERI|1|AA|C|1682
6ERI|1|AA|G|1683
6ERI|1|AA|C|1684
*
6ERI|1|AA|G|2023
6ERI|1|AA|G|2024

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L17, chloroplastic

Chain AS

50S ribosomal protein L22, chloroplastic

Chain Aa

50S ribosomal protein L32, chloroplastic