J4_6ERI_009

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

6ERI|1|AA|A|1985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ERI_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1007

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

6ERI|1|AA|C|1843
6ERI|1|AA|U|1844
6ERI|1|AA|G|1845
*
6ERI|1|AA|C|1919
6ERI|1|AA|G|1920
*
6ERI|1|AA|C|1938
6ERI|1|AA|C|1939
6ERI|1|AA|U|1940
6ERI|1|AA|A|1941
6ERI|1|AA|A|1942
6ERI|1|AA|G|1943
6ERI|1|AA|G|1944
6ERI|1|AA|U|1945
6ERI|1|AA|A|1946
6ERI|1|AA|G|1947
*
6ERI|1|AA|C|1981
6ERI|1|AA|G|1982
6ERI|1|AA|A|1983
6ERI|1|AA|A|1984
6ERI|1|AA|A|1985
6ERI|1|AA|G|1986

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain Az

Ribosome-recycling factor, chloroplastic

Chain BA

Small subunit ribosomal RNA; SSU rRNA