J4_6ERI_012

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6ERI|1|BA|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ERI_012 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1087

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ERI|1|BA|G|100
6ERI|1|BA|A|101
6ERI|1|BA|G|102
6ERI|1|BA|U|103
6ERI|1|BA|A|104
6ERI|1|BA|A|105
6ERI|1|BA|C|106
6ERI|1|BA|G|107
*
6ERI|1|BA|U|211
6ERI|1|BA|C|212
*
6ERI|1|BA|G|258
6ERI|1|BA|U|259
6ERI|1|BA|A|260
6ERI|1|BA|G|261
*
6ERI|1|BA|C|283
6ERI|1|BA|C|284

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16, chloroplastic

Chain BQ

30S ribosomal protein S17, chloroplastic