J4_6ERI_013
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAG*CGUAGG*CAAAAG*CGC
- Length
- 18 nucleotides
- Bulged bases
- 6ERI|1|BA|G|167, 6ERI|1|BA|A|181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ERI_013 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.3728
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ERI|1|BA|G|127
6ERI|1|BA|A|128
6ERI|1|BA|G|129
*
6ERI|1|BA|C|163
6ERI|1|BA|G|164
6ERI|1|BA|U|165
6ERI|1|BA|A|166
6ERI|1|BA|G|167
6ERI|1|BA|G|168
*
6ERI|1|BA|C|177
6ERI|1|BA|A|178
6ERI|1|BA|A|179
6ERI|1|BA|A|180
6ERI|1|BA|A|181
6ERI|1|BA|G|182
*
6ERI|1|BA|C|191
6ERI|1|BA|G|192
6ERI|1|BA|C|193
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BT
- 30S ribosomal protein S20, chloroplastic
Coloring options: