J4_6FKR_012

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6FKR|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FKR_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1172

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6FKR|1|1a|G|142
6FKR|1|1a|A|143
6FKR|1|1a|G|144
*
6FKR|1|1a|C|178
6FKR|1|1a|A|179
6FKR|1|1a|U|180
6FKR|1|1a|G|181
6FKR|1|1a|U|182
6FKR|1|1a|G|183
*
6FKR|1|1a|C|194
6FKR|1|1a|A|195
6FKR|1|1a|A|196
6FKR|1|1a|A|197
6FKR|1|1a|G|198
*
6FKR|1|1a|C|219
6FKR|1|1a|G|220
6FKR|1|1a|C|221

Current chains

Chain 1a

16 ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20