J4_6FRK_005

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6FRK|1|5|A|2366, 6FRK|1|5|U|2369, 6FRK|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FRK|1|5|C|2365
6FRK|1|5|A|2366
6FRK|1|5|A|2367
6FRK|1|5|A|2368
6FRK|1|5|U|2369
6FRK|1|5|A|2370
6FRK|1|5|U|2371
*
6FRK|1|5|A|2389
6FRK|1|5|G|2390
6FRK|1|5|G|2391
*
6FRK|1|5|C|2824
6FRK|1|5|A|2825
6FRK|1|5|U|2826
6FRK|1|5|G|2827
6FRK|1|5|U|2828
6FRK|1|5|U|2829
*
6FRK|1|5|A|3856
6FRK|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uL22

Chain R

Ribosomal protein eL19

Chain d

Ribosomal protein eL31