J4_6FTG_004

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6FTG|1|u|A|2366, 6FTG|1|u|U|2369, 6FTG|1|u|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTG|1|u|C|2365
6FTG|1|u|A|2366
6FTG|1|u|A|2367
6FTG|1|u|A|2368
6FTG|1|u|U|2369
6FTG|1|u|A|2370
6FTG|1|u|U|2371
*
6FTG|1|u|A|2389
6FTG|1|u|G|2390
6FTG|1|u|G|2391
*
6FTG|1|u|C|2824
6FTG|1|u|A|2825
6FTG|1|u|U|2826
6FTG|1|u|G|2827
6FTG|1|u|U|2828
6FTG|1|u|U|2829
*
6FTG|1|u|A|3856
6FTG|1|u|G|3857

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31