J4_6FTG_007

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FTG_007 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.0913

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTG|1|u|G|3634
6FTG|1|u|A|3635
6FTG|1|u|C|3636
6FTG|1|u|U|3637
6FTG|1|u|G|3638
*
6FTG|1|u|C|3650
6FTG|1|u|A|3651
6FTG|1|u|A|3652
6FTG|1|u|A|3653
6FTG|1|u|G|3654
*
6FTG|1|u|U|3690
6FTG|1|u|G|3691
6FTG|1|u|A|3692
6FTG|1|u|U|3693
6FTG|1|u|U|3694
*
6FTG|1|u|A|3821
6FTG|1|u|U|3822
6FTG|1|u|G|3823
6FTG|1|u|A|3824
6FTG|1|u|A|3825
6FTG|1|u|C|3826

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain n

60s ribosomal protein l41

Chain p

Ribosomal protein L37a