J4_6FTG_011

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

6FTG|1|u|U|4677

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTG|1|u|G|4587
6FTG|1|u|U|4588
6FTG|1|u|A|4589
6FTG|1|u|A|4590
*
6FTG|1|u|U|4620
6FTG|1|u|C|4621
*
6FTG|1|u|G|4676
6FTG|1|u|U|4677
6FTG|1|u|G|4678
*
6FTG|1|u|C|4712
6FTG|1|u|G|4713
6FTG|1|u|C|4714
6FTG|1|u|C|4715

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14