J4_6FTJ_010
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 6FTJ|1|u|A|4234
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6FTJ_010 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1876
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6FTJ|1|u|C|4231
6FTJ|1|u|U|4232
6FTJ|1|u|A|4233
6FTJ|1|u|A|4234
6FTJ|1|u|G|4235
*
6FTJ|1|u|U|4289
6FTJ|1|u|U|4290
6FTJ|1|u|G|4291
6FTJ|1|u|A|4292
6FTJ|1|u|U|4293
*
6FTJ|1|u|A|4317
6FTJ|1|u|C|4318
6FTJ|1|u|C|4319
*
6FTJ|1|u|G|4328
6FTJ|1|u|G|4329
6FTJ|1|u|G|4330
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
- Chain o
- eL42
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