Motif J4_59590.1 Version J4_59590.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 1-15 | 3-6 | 3-8 | 4-5 | 7-11 | 9-10 | 12-13 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8GLP_012 | 8GLP | 0.2160 | 1 | L5 | LSU rRNA | C | 4231 | U | 4232 | A | 4233 | G | 4235 | * | U | 4289 | U | 4290 | G | 4291 | A | 4292 | PSU | 4293 | * | A | 4317 | C | 4318 | C | 4319 | * | G | 4328 | G | 4329 | G | 4330 | cWW | tWW | tHH | cWW | cWW | cWW | cWW |
| 2 | J4_8P9A_019 | 8P9A | 0.0000 | 1 | AR | LSU rRNA | C | 2654 | U | 2655 | A | 2656 | G | 2658 | * | U | 2712 | U | 2713 | G | 2714 | A | 2715 | U | 2716 | * | A | 2740 | C | 2741 | C | 2742 | * | G | 2751 | U | 2752 | G | 2753 | cWW | tWW | tHH | cWW | ncHW | cWW | cWW |
| 3 | J4_8OI5_008 | 8OI5 | 0.0711 | 1 | 1 | LSU rRNA | C | 2626 | U | 2627 | A | 2628 | G | 2630 | * | U | 2684 | U | 2685 | G | 2686 | A | 2687 | U | 2688 | * | A | 2712 | C | 2713 | C | 2714 | * | G | 2723 | U | 2724 | G | 2725 | cWW | tWW | ntHH | cWW | ncHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UUGAU*ACC*GUG | 2 |
| CUAAG*UUGAPSU*ACC*GGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*UGA*C*U | 2 |
| UAA*UGA*C*G | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.22
Coloring options: