J4_6FXC_012

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6FXC|1|BA|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FXC_012 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1138

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6FXC|1|BA|C|271
6FXC|1|BA|C|272
*
6FXC|1|BA|G|416
6FXC|1|BA|A|417
6FXC|1|BA|G|418
6FXC|1|BA|U|419
6FXC|1|BA|A|420
6FXC|1|BA|C|421
*
6FXC|1|BA|G|445
6FXC|1|BA|G|446
6FXC|1|BA|A|447
6FXC|1|BA|A|448
6FXC|1|BA|U|449
6FXC|1|BA|C|450
6FXC|1|BA|U|451
6FXC|1|BA|G|452
*
6FXC|1|BA|U|467
6FXC|1|BA|A|468
6FXC|1|BA|A|469
6FXC|1|BA|G|470

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L28