J4_6FXC_020

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FXC_020 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1322

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6FXC|1|BA|G|2670
6FXC|1|BA|A|2671
6FXC|1|BA|G|2672
6FXC|1|BA|C|2673
*
6FXC|1|BA|G|2701
6FXC|1|BA|A|2702
6FXC|1|BA|C|2703
*
6FXC|1|BA|G|2758
6FXC|1|BA|G|2759
6FXC|1|BA|A|2760
6FXC|1|BA|C|2761
6FXC|1|BA|G|2762
*
6FXC|1|BA|C|2796
6FXC|1|BA|C|2797
6FXC|1|BA|C|2798

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BH

50S ribosomal protein L13

Chain BI

50S ribosomal protein L14