J4_6FYX_002

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

6FYX|1|2|A|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FYX_002 not in the Motif Atlas

Homologous match to J4_8P9A_021

Geometric discrepancy: 0.1003

The information below is about J4_8P9A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.3

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

4

Unit IDs

6FYX|1|2|C|99
6FYX|1|2|A|100
6FYX|1|2|U|101
6FYX|1|2|U|102
6FYX|1|2|A|103
6FYX|1|2|A|104
6FYX|1|2|A|105
6FYX|1|2|U|106
6FYX|1|2|C|107
*
6FYX|1|2|G|306
6FYX|1|2|C|307
6FYX|1|2|C|308
*
6FYX|1|2|G|356
6FYX|1|2|U|357
6FYX|1|2|A|358
6FYX|1|2|A|359
6FYX|1|2|C|360
*
6FYX|1|2|G|382
6FYX|1|2|G|383

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p

Chain X

KLLA0B11231p