J4_6GC0_010

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6GC0|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC0_010 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1415

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GC0|1|A|C|268
6GC0|1|A|C|269
*
6GC0|1|A|G|370
6GC0|1|A|A|371
6GC0|1|A|G|372
6GC0|1|A|U|373
6GC0|1|A|A|374
6GC0|1|A|G|375
*
6GC0|1|A|U|399
6GC0|1|A|G|400
6GC0|1|A|A|401
6GC0|1|A|A|402
6GC0|1|A|U|403
6GC0|1|A|A|404
6GC0|1|A|U|405
6GC0|1|A|G|406
*
6GC0|1|A|C|421
6GC0|1|A|A|422
6GC0|1|A|A|423
6GC0|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28