J4_6GC0_012

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6GC0|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC0_012 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1142

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GC0|1|A|U|1313
6GC0|1|A|C|1314
*
6GC0|1|A|G|1338
6GC0|1|A|G|1339
6GC0|1|A|U|1340
6GC0|1|A|G|1341
6GC0|1|A|A|1342
6GC0|1|A|G|1343
*
6GC0|1|A|C|1404
6GC0|1|A|U|1405
*
6GC0|1|A|A|1597
6GC0|1|A|A|1598
6GC0|1|A|U|1599
6GC0|1|A|C|1600
6GC0|1|A|G|1601
6GC0|1|A|U|1602
6GC0|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23