J4_6GC4_011

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

6GC4|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC4_011 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.2032

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

6GC4|1|A|C|2285
6GC4|1|A|G|2286
6GC4|1|A|A|2287
6GC4|1|A|A|2288
6GC4|1|A|G|2289
*
6GC4|1|A|U|2343
6GC4|1|A|U|2344
6GC4|1|A|G|2345
6GC4|1|A|A|2346
6GC4|1|A|C|2347
*
6GC4|1|A|G|2370
6GC4|1|A|G|2371
6GC4|1|A|U|2372
*
6GC4|1|A|A|2381
6GC4|1|A|G|2382
6GC4|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27