3D structure

PDB id
6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 3
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
6GC4|1|A|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6GC4_011 not in the Motif Atlas
Homologous match to J4_9DFE_009
Geometric discrepancy: 0.2032
The information below is about J4_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6GC4|1|A|C|2285
6GC4|1|A|G|2286
6GC4|1|A|A|2287
6GC4|1|A|A|2288
6GC4|1|A|G|2289
*
6GC4|1|A|U|2343
6GC4|1|A|U|2344
6GC4|1|A|G|2345
6GC4|1|A|A|2346
6GC4|1|A|C|2347
*
6GC4|1|A|G|2370
6GC4|1|A|G|2371
6GC4|1|A|U|2372
*
6GC4|1|A|A|2381
6GC4|1|A|G|2382
6GC4|1|A|G|2383

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27

Coloring options:


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