J4_6GQB_004
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6GQB|1|1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GQB_004 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1145
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQB|1|1|G|1492
6GQB|1|1|G|1493
6GQB|1|1|U|1494
6GQB|1|1|U|1495
6GQB|1|1|C|1496
*
6GQB|1|1|G|1520
6GQB|1|1|G|1521
6GQB|1|1|U|1522
6GQB|1|1|U|1523
6GQB|1|1|A|1524
6GQB|1|1|G|1525
*
6GQB|1|1|C|1614
6GQB|1|1|C|1615
*
6GQB|1|1|G|1829
6GQB|1|1|G|1830
6GQB|1|1|U|1831
6GQB|1|1|C|1832
6GQB|1|1|G|1833
6GQB|1|1|U|1834
6GQB|1|1|A|1835
6GQB|1|1|C|1836
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
- Chain j
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39
Coloring options: