J4_6GSK_015

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSK_015 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1171

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6GSK|1|1G|G|142
6GSK|1|1G|A|143
6GSK|1|1G|G|144
*
6GSK|1|1G|C|178
6GSK|1|1G|A|179
6GSK|1|1G|U|180
6GSK|1|1G|G|181
6GSK|1|1G|U|182
6GSK|1|1G|G|183
*
6GSK|1|1G|C|194
6GSK|1|1G|A|195
6GSK|1|1G|A|196
6GSK|1|1G|A|197
6GSK|1|1G|G|198
*
6GSK|1|1G|C|219
6GSK|1|1G|G|220
6GSK|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20