J4_6GSK_026

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

6GSK|1|1H|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSK_026 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1734

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

6GSK|1|1H|C|2285
6GSK|1|1H|A|2286
6GSK|1|1H|A|2287
6GSK|1|1H|A|2288
6GSK|1|1H|G|2289
*
6GSK|1|1H|C|2343
6GSK|1|1H|U|2344
6GSK|1|1H|G|2345
6GSK|1|1H|A|2346
6GSK|1|1H|C|2347
*
6GSK|1|1H|G|2370
6GSK|1|1H|G|2371
6GSK|1|1H|G|2372
*
6GSK|1|1H|C|2381
6GSK|1|1H|G|2382
6GSK|1|1H|G|2383

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain A8

50S ribosomal protein L18

Chain I8

50S ribosomal protein L27

Chain Q8

50S ribosomal protein L35