J4_6GSL_002

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6GSL|1|13|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSL_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1884

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6GSL|1|13|G|142
6GSL|1|13|A|143
6GSL|1|13|G|144
*
6GSL|1|13|C|178
6GSL|1|13|A|179
6GSL|1|13|U|180
6GSL|1|13|G|181
6GSL|1|13|U|182
6GSL|1|13|G|183
*
6GSL|1|13|C|194
6GSL|1|13|A|195
6GSL|1|13|A|196
6GSL|1|13|A|197
6GSL|1|13|G|198
*
6GSL|1|13|C|219
6GSL|1|13|G|220
6GSL|1|13|C|221

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain BI

30S ribosomal protein S20