J4_6GSL_004

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6GSL|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSL_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0748

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GSL|1|14|C|268
6GSL|1|14|U|269
*
6GSL|1|14|G|370
6GSL|1|14|A|371
6GSL|1|14|G|372
6GSL|1|14|U|373
6GSL|1|14|A|374
6GSL|1|14|C|375
*
6GSL|1|14|G|399
6GSL|1|14|G|400
6GSL|1|14|A|401
6GSL|1|14|A|402
6GSL|1|14|U|403
6GSL|1|14|C|404
6GSL|1|14|U|405
6GSL|1|14|G|406
*
6GSL|1|14|U|421
6GSL|1|14|A|422
6GSL|1|14|A|423
6GSL|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28