J4_6GXM_001

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6GXM|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GXM_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2017

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GXM|1|A|C|268
6GXM|1|A|C|269
*
6GXM|1|A|G|370
6GXM|1|A|A|371
6GXM|1|A|G|372
6GXM|1|A|U|373
6GXM|1|A|A|374
6GXM|1|A|G|375
*
6GXM|1|A|U|399
6GXM|1|A|G|400
6GXM|1|A|A|401
6GXM|1|A|A|402
6GXM|1|A|U|403
6GXM|1|A|A|404
6GXM|1|A|U|405
6GXM|1|A|G|406
*
6GXM|1|A|C|421
6GXM|1|A|A|422
6GXM|1|A|A|423
6GXM|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28