J4_6GXN_001

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6GXN|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GXN_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2012

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GXN|1|A|C|268
6GXN|1|A|C|269
*
6GXN|1|A|G|370
6GXN|1|A|A|371
6GXN|1|A|G|372
6GXN|1|A|U|373
6GXN|1|A|A|374
6GXN|1|A|G|375
*
6GXN|1|A|U|399
6GXN|1|A|G|400
6GXN|1|A|A|401
6GXN|1|A|A|402
6GXN|1|A|U|403
6GXN|1|A|A|404
6GXN|1|A|U|405
6GXN|1|A|G|406
*
6GXN|1|A|C|421
6GXN|1|A|A|422
6GXN|1|A|A|423
6GXN|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28