3D structure

PDB id
6GXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UC*GGUGAG*CU*AAUCGUA
Length
17 nucleotides
Bulged bases
6GXN|1|A|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6GXN_005 not in the Motif Atlas
Homologous match to J4_5J7L_023
Geometric discrepancy: 0.1444
The information below is about J4_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_10313.5
Basepair signature
cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6GXN|1|A|U|1313
6GXN|1|A|C|1314
*
6GXN|1|A|G|1338
6GXN|1|A|G|1339
6GXN|1|A|U|1340
6GXN|1|A|G|1341
6GXN|1|A|A|1342
6GXN|1|A|G|1343
*
6GXN|1|A|C|1404
6GXN|1|A|U|1405
*
6GXN|1|A|A|1597
6GXN|1|A|A|1598
6GXN|1|A|U|1599
6GXN|1|A|C|1600
6GXN|1|A|G|1601
6GXN|1|A|U|1602
6GXN|1|A|A|1603

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain T
50S ribosomal protein L23

Coloring options:


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