J4_6GZ3_010

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

6GZ3|1|B1|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZ3_010 not in the Motif Atlas

Homologous match to J4_8P9A_021

Geometric discrepancy: 0.1762

The information below is about J4_8P9A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.2

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

3

Unit IDs

6GZ3|1|B1|C|98
6GZ3|1|B1|A|99
6GZ3|1|B1|U|100
6GZ3|1|B1|U|101
6GZ3|1|B1|A|102
6GZ3|1|B1|A|103
6GZ3|1|B1|A|104
6GZ3|1|B1|U|105
6GZ3|1|B1|C|106
*
6GZ3|1|B1|G|355
6GZ3|1|B1|C|356
6GZ3|1|B1|C|357
*
6GZ3|1|B1|G|405
6GZ3|1|B1|U|406
6GZ3|1|B1|G|407
6GZ3|1|B1|A|408
6GZ3|1|B1|C|409
*
6GZ3|1|B1|G|431
6GZ3|1|B1|G|432

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BI

ribosomal protein eS8

Chain BL

Ribosomal protein S11

Chain BX

Ribosomal protein S23