J4_6GZ4_012
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6GZ4|1|B1|A|672, 6GZ4|1|B1|A|1083, 6GZ4|1|B1|C|1085, 6GZ4|1|B1|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GZ4_012 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0992
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6GZ4|1|B1|A|671
6GZ4|1|B1|A|672
6GZ4|1|B1|G|673
*
6GZ4|1|B1|C|1032
6GZ4|1|B1|G|1033
6GZ4|1|B1|A|1034
6GZ4|1|B1|A|1035
6GZ4|1|B1|A|1036
6GZ4|1|B1|G|1037
*
6GZ4|1|B1|C|1078
6GZ4|1|B1|C|1079
6GZ4|1|B1|A|1080
6GZ4|1|B1|U|1081
6GZ4|1|B1|A|1082
6GZ4|1|B1|A|1083
6GZ4|1|B1|A|1084
6GZ4|1|B1|C|1085
6GZ4|1|B1|G|1086
6GZ4|1|B1|A|1087
6GZ4|1|B1|U|1088
6GZ4|1|B1|G|1089
*
6GZ4|1|B1|U|1160
6GZ4|1|B1|U|1161
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- ribosomal protein eL41
- Chain Ap
- ribosomal protein eL43
- Chain BL
- ribosomal protein uS17
- Chain BN
- ribosomal protein uS15
- Chain BO
- ribosomal protein uS11
- Chain BW
- ribosomal protein uS8
- Chain BX
- ribosomal protein uS12
- Chain Ba
- ribosomal protein eS26
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